The Automated Cell Analysis Pipeline (ACAP) software can identify and analyse microglial cells to provide cell density, size and process coverage.

Download the CellProfiler pipeline here and instructions on how to use it here.

Download the examples referred to in the instructions here.

Copyright Medical Research Council. This CellProfiler pipeline is free software, it is licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. Find out more here.